By Baluchistan on Flickr under a Creative Commons Licence. No, this young man is not the SK1414 tester, but the mandolinist in me found this photo kind of cool.  A young man from Makran.  The other SK1414 tester was also a male Makrani Baloch.

I'm hot on the trail of my Y or paternal line, following my FTDNA Y111 STR, then Big Y tests.  These tests analysed the DNA on my Y chromosome.  It is passed down strictly from father to biological sons.  the mutations (SNP and STR) that can be identified in the Y-DNA, can be used to assess relationship, and in some cases, to date the time of most recent common ancestry.  So, with the assistance of Gareth Henson, administrator of the FT-DNA Y haplogroup L Project, and with help from my new distant cousins, what have I learned over the past few weeks?

The Smoking Gun of Y-DNA

Between 45,000 and 13,000 years ago, my paternal ancestors most likely were hunter-gatherers, that lived in the region of what is now Iran and Iraq, during the last Ice Age.  Some sharp changes in glaciation, and cold extremes towards the end of that period, may have generated a number of adaptations, and subsequently, split new sub clades of my Y haplogroup L.

13,000 years ago (based on the Big Y test), I share a common paternal great x grandfather with a number of distant cousins, that descend from Pontic Greek families from the Trabzon region in Turkey.

Between 3,000 and 1,000 years ago (based on the less accurate STR evidence at 111 marker), I share common paternal great x grandfather with another cousin, who's paternal line Habibi, can be traced back to the 1850's in the town of Birjand, Southern Khorasan, Eastern Iran, close to the modern Afghanistan border.  This closer cousin now lives in Australia.

My Big Y test produced no less than 90 previously unrecorded or known SNP (pronounced "snip") mutations.  That might be because my Y-DNA is rare, or / and, that it is mainly found in parts of the World where very few people test at this level.  The last SNP on the roll that had been seen before, has been called SK1414.  Because now two of us have tested for this SNP, it is my terminal SNP, so at the moment (although it still has to be submitted to the YFull Tree), I can declare my Y haplogroup sub clade designation to be L-SK1414.  Only one of two so far recorded in the World.

So, who is this Y cousin that shares my SK1414 mutation?

My Baluchistan Cousin

By Baluchistan on Flickr under a Creative Commons Licence.  Another photo from Makran, Balochistan.

The other SK1414 turned up during an early survey, back in the early 2000s by the Human Genome Diversity Project.  It turned up in a sample of the Baluchi in Makran, South-west Pakistan.  Could this cousin be closer than the Habibi tester?  Could my Habibi cousin, from an eastern Iranian family also carry SK1414?

The Baluch, are an Iranic people, that speak Baluchi, an Iranian language that belongs, as do most European languages, to the Indo-European linguistic family.  According to the Iran Chamber Society website, they moved to Makran during the 12th Century AD.  Traditionally the Baluch claim that they originated in Syria, but a linguistic study has instead suggested that they actully originated from the south east of the Caspian region, and that they moved westwards between the 6th and 12th centuries AD in a series of waves.  No other Y sub clade L1b (L-M317) have been found in Southern Asia outside of two samples of this survey, so perhaps the tester did have ancestry from Western Asia.

It would seem likely that I do have a number of Y cousins, most likely in the region of Eastern Iran and South-Western Pakistan.  That doesn't necessarily follow though, that our most recent common Y ancestors lived there.  As I said above, the Baluch of Makrani, Pakistan are said to have migrated from further north-west, from the Caspian Sea region.

There is a tentative suggestion of a link to the Parsi. A Portuguese STR tester with a genetic distance (based on 67 markers) of 22, has (thanks again Gareth) "a distinctive value of 10 at DYS393. In the Qamar paper this value is found in the Parsi population".  So there is just the possibility also, of the Parsi ethnicity carrying L1b from Western Asia into Southern Asia.  Perhaps this marker was picked up by a Portuguese seafarer link to Southern Asia.  It could even be the link to my English line, via the Anglo-Portuguese Alliance.  A lot of speculation.  I don't think that M317 has been found yet in India.

Into England

I have found STR links with four people that carry the surname Chandler.  They live in England, Australia, and the USA.  These cousins appear to descend from a Thomas Chandler, that lived in Basingstoke during the 1740s.  That is 32 miles away from my own contemporary surname ancestor, John Brooker, who lived at the same time at the village of Long Wittenham in the Thames Valley.

Unfortunately three of the Chandlers have only 12 markers tested, and the fourth at 37 markers.  Therefore time of most recent ancestor is not accurate, but it looks as the Chandler and Brooker Y hg L testers of Southern England, most likely shared a common paternal great x grandfather sometime between 800 and 350 years ago.

That only these two lines have turned up, and that they are geographically and genetically so close, might suggest that our Y-DNA lineage arrived in Southern England around the late medieval, perhaps from between the 13th and 17th centuries AD.  It could just be through a Portuguese navigator link, or it could be through thousands of other routes.  More L-M20 testers could turn up in England in the future, that could push the arrival to an earlier date.

Today

I could have any number of cousins from south England.  The Brookers and Chandlers may well have other paternal line descendants living in the Thames Valley, Hampshire, London, or elsewhere.  I'd love to prove a Brooker from the Berkshire / Oxfordshire area, as sharing ancestry.  I believe for example, that the journalist Charlie Brooker descends from one of the Thames Valley families, although not necessarily from mine.  Do they carry the Y hg L?

My great great grandfather Henry Brooker, did not appear to have any more sons, other than my great grandfather John Henry Brooker - who in turn, only had one son, my grandfather Reginald John Brooker.

I have one Y haplogroup first cousin.  He has I believe, a son, and a grandson.

The above Photograph of the Sumela Monastery, Trabzon Mountains, former Pontus, by reibai of Flickr under Creative Commons Licence.  Close to the home of my nearest recorded Big Y cousins today.

The Big Y Test

The FTDNA results came back.  As with the Y111 test results, they were three weeks earlier than scheduled.  So what has this test told me, about the story of my Y-DNA, and it's exotic L-M20 genetic marker? It was not a disappointment.

Warning

Remember, I am only telling the story of one single line of descent.  Y-DNA merely provides a convenient genetic marker of mutation, that can be compared and traced with others.  It does not define anyone.  From an anthropological perspective, haplogroups are of value in a collective sense - to a population.  I no doubt share the story of my Y with many more people alive today.  I may be a carrier of it, but it is also your story, just as the haplogroups that you carry, are also my story - through our mothers and shared descent.  Y-DNA passes strictly on only one line of descent - from father to son.  It is not inherited nor passed down by women.  Only on that one strict paternal line of descent. The Y haplogroup is only a convenient marker of one line.

The Y Haplogroup L

Y Haplogroup K formed in a paternal lineage of hunter-gatherer fathers and sons, that share a MRCA (most recent common ancestor) during the Upper Palaeolithic, circa 45,400 years ago.  Where did my Y ancestors live at that time?  We think that they lived in Western or Southern Asia.  Iran is a favourite proposal. My earlier Y ancestors had most likely exited Africa 20,000 years earlier, and were well established in Asia.  They had most likely met and confronted another archaic human species, The Neanderthal. This was however, a time of great expansion by humans.  The first anatomically modern humans had recently entered Europe, while other moderns u were arriving in Australia.  The Ice Age was in a flux, but glaciation was advancing.

Our most recent common Y ancestor to carry Y Haplogroup LT lived circa 42,600 years ago.  Then a mutation in the Y-DNA lead to the formation of Y Haplogroup L, with a most recent common ancestor 23,200 years ago, close to the time of the Last Glacial Maximum, when ice sheets were reaching their maximum positions.  K, LT, and early L, most likely all originated in Upper Palaeolithic hunter-gatherer populations living during the last Ice Age, in the area of modern day Iran and Iraq.  It was a time of increased stress on human populations, that were having to adapt to some severe environmental challenges, and may have at times faced isolation into a number of Ice Age Refuges.

Around 18,400 years ago, M317 appeared on their Y-DNA, then circa 14,000 years ago, my line (L-SK1214), diverged away from L-M349.  L1b today, occurs mainly in Western Asia, from Anatolia to Afghanistan.  L1a occurs mainly in India, Sri Lanka, and in Pakistan.  Where did all of this occur?  We don't know yet.  There is so little data.  Some other divergences popped up in Southern and Central Asia.  Some of these sub clades in India and Pakistan, are the most numerous of L today.  However, the finger keeps pointing at Western Asia, as the source of much of L divergence, particularly in L1b sub clades such as M317, and M349.  But we don't yet know what part Europe played if any.  Both M317 and M349 crops at low frequencies across Europe, particularly along the south coast, and in Italy.  L2 (L595) crops at at low frequency almost exclusively in Europe.  Altogether, L forms only around 0.3% across Europe as a whole, yet, this diversity sits at low frequencies scattered across the continent.

Iran may equally be a key.  We believe that it could have been home to L for a very long time, but we have very little data from that part of the world.  L is also missing from ancient DNA.  A hypothesis has been proposed that some early Neolithic farmers from Anatolia, may have carried L, and may have carried it into Europe for example.  All speculation, but it could explain some of these old divisions of L that we are starting to see across Europe and Western Asia.  Some of the earliest Eurasian L Y-DNA extracted so far has only very recently been reported - in populations of Iron Age Huns, that had migrated westwards into Europe.

My Big Y Results

So what did the test tell me about my line?  Was I descended from a recent immigrant from India or Pakistan?  An Iron Age Hun?  An Italian?  How about a Pontic Greek, or a Persian?  Where do I fit in?

The answers provided by the Big Y were a bit of a shock.  I had 90 novel SNPs in my Y-DNA, that have not been seen before in any other Big Y Test, not even in any of the other 23 Big Y test results within the FTDNA Y Haplogroup L project.  The last SNP to terminate, that has already been reported, was SK1414.  The administrator has not yet found it's non-FTDNA origin, but believes that it came from a test in Iran.  Therefore, my sub clade can now be declared as L-SK1214.

My nearest FTDNA Big Y matches were two from Pontic Greek ancestry.  However, here is the crunch.  The project administrator calculates that even these testers, my closest known Y cousins that have so far tested to Big Y level, last shared a common Y ancestor with me 13,000 years ago.

When I have my BAM file, and submit it to the Yfull tree, it should make a significant alteration to the branches, as my lineage of SK1414, appears to branch off from L1b, perhaps only 1000 years after L1b appeared, and before the PH8 lineage associated with my Pontic Greek cousins formed.

L-SK1414 (L1b2c)

Conclusion

It seems that I have 12,700 years of unwritten or detected family history to research on my paternal line.  The Big Y test told me that I have a hunter-gatherer ancestor, somewhere in Western Asia, most likely Iraq / Iran, perhaps 13,000 years ago.  Then a rather long gap, until the Brooker surname appears on parish registers in the Thames Valley of Southern England, leading down to myself, and onto my son.

The Chandler family, judging by the comparative STR evidence, are Y cousins, with a shared Y ancestry until circa 330 - 700 years ago.

That's it.  We were missing for a long time.  I'm looking forward to trying to work out where my missing ancestors were for thousands of years.  I'm looking forward to seeing more L1b tests appear on Yfull and on the Y haplogroup L Project.  Please test.

Hear a sentence like "immigrants in Eastern England", and many people might think of the recent immigration from countries such as Poland, Lithuania, and Romania.  However, I'm interested in the longer picture, and how that has impacted the genetic genealogy of East Anglians.

I have noticed, that my mother's 23andMe ancestral composition, is more similar to those of some Dutch testers, than most Irish, Scottish, or West British testers.  23andme has reported at least one small segment shared with a Dutch tester.  My mother on Ancestry Composition speculative mode, scored only 36% "British & Irish", followed by 13% "French & German", 4% "Scandinavian", 2% "South European", and 40% unassigned "Broadly NW European".

My first reaction was that the 23andme calculators and references were confused by relatively ancient admixture, specifically Early Medieval Immigration between the 5th and 11th centuries AD.  The Anglo-Saxon and Viking periods.

However, I'm beginning to review how I see the history of East Anglia.  I think that like many people, I've underplayed the contribution not only of earlier unrecorded immigration events, but also of ongoing later immigration from the European Continent, into East Anglia.

A shock historical suggestion, is that during the late 16th Century, almost a third of the population of the City of Norwich, belonged to an immigrant community of Dutch, Flemish, and Walloon protestants, that had recently settled there, as refugees from persecution on the Continent.  I don't know how many of these immigrants, into centres such as Norwich, Ipswich, kings Lynn, and Great Yarmouth, left descendants in East Anglia.  My parent's recorded Norfolk ancestry is very rural - outside of Norwich.  However, how much DNA did these more recent immigrants leave behind in Norfolk, and East Anglia as a whole?

The immigration events of the 5th to 11th centuries AD into East Anglia, were most likely the most significant.  However, I believe it is wrong to see them as the only immigration events.  The POBI Study found DNA evidence of an earlier, perhaps late prehistoric immigration from the Continent.  Caesar claimed that the people that he called the Belgae had recently immigrated to South East Britain, from the area that is now Belgium.

Neither were the Anglo-Saxon, Dane-Law, nor Norman immigration events the last to the region.  It continued as a background, with occasional known events, such as the Strangers from what is now Belgium and the Netherlands, to Norwich.  East Anglia has always had stronger connections to across the North Sea, than some other regions of Britain. Therefore it should be no suprise, that my mother, with her strong recorded East Norfolk ancestry, has an autosomal ancestry composition, that resembles the Dutch, more than the Welsh or Irish.

I visited the Bridewell Alley Museum today, for the first time for many years, and picked up a new book: Strangers.  A History of Norwich's Incomers by Frank Meeres 2012.  It's full of references to the history of immigration into Norwich.  I thought that it might be useful, to harvest some of the continental immigrant surnames mentioned in this book:

Medieval

• Addurge (French)
• Asger (Bruges, Belgium).
• de Norwege (Norway)
• Dutchman
• Glasier (French)
• Hensser  (Dutch)
• Isborne 
• Jevort (French)
• Johnson (Dutch)
• Kempe de Gaunt (Ghent)
• Kenneton (French)
• Mouner  (French)
• Oreng (French)
• Peterson (Dutch)
• Petirson (Dutch)
• Rijsel (Flemish)
• Tiphany (French)

In 1343, a boat capsized at Cantley.  It had passengers from Latvia and Sweden.

The Strangers 1560 - 1600 AD

In 1571, a return of the Strangers, recorded that there were 4,013 Strangers in Norwich.  This included 868 Dutchmen, and 203 Walloon men.

• Bateman
• Clarebote (Winnezele)
• Clapettia
• Clercke (Dutch)
• Baet
• Bake (Ypres)
• Bartingham (Dutch)
• Coene (Ypres)
• Dedecre (Dutch)
• De Linne
• De Mol
• De Turk (Flanders)
• Der Haghe
• Des Passett
• Faber (East Flanders)
• Goddarte
• Gruter (Antwerp)
• Herjtes (Flemish)
• Hodgeson (Dutch)
• Johnson (Dutch)
• Keerlinck (Ypres)
• Lewalle (Walloon)
• Moded (Antwerp)
• Navegeer
• Le Dente
• Poultier (Dieppe)
• Powells (Dutch)
• Steene (Dutch)
• Vamboute (St Jans-Kappel)
• Van Brugen (Dutch)
• Waells (Houtkerke)
• Wervekin (Ypres)

These are just the surnames of some of the Norwich Strangers, mentioned in the above book.  Just how much did they, and others, contribute though, to the genealogy of Norfolk and East Anglia.  Most belonged to aspiring classes of artisans and merchants.  Weavers, printers, hat makers, etc.  How much of their DNA might have seeped into the surrounding countryside?

Link to STR data for Southern English L M20 (Brooker / Chandler)

My Family Tree DNA Y111 STR test results are in.  Only yesterday, I predicted that ftDNA kit number 29369 could be of particular interest.  That prediction has now been proven correct.  Here is what I have learned since yesterday.

The 12 marker STR kit belonged to a descendant of a Thomas Chandler, that lived 1728 to 1782 at Basingstoke, Hampshire.  Although only 12 markers - it proved a perfect match for my first 12.  100%.  Family Tree DNA rated it's genetic distance as zero.

Basingstoke, Hampshire by modern road is only 32 miles (51 km) from Long Wittenham, Berkshire (now Oxon), where my surname ancestor, John Brooker lived, at the same time.  Based on the limitation of a 12 marker comparison, FTDNA give 71% confidence to the testers sharing a common Y ancestor within 12 generations, and 91% confidence of us sharing a common Y ancestor within 24 generations.  I'd say that suggests that myself and the present day descendant of Thomas Chandler, shared a common Y ancestral lineage until between circa 1500 and 1700.

So most likely, between the 16th and 17th centuries inclusive, the Y chromosome moved between two surnames, what we call an NPE (non parental event).  Usually either illegitimacy, where the Y-DNA detached from the surname of the biological father, or simply, the biological father of an ancestor, was not the husband of their mother.  This event most probably occurred in England, somewhere in the Hampshire, Berkshire, Oxfordshire area.  Both my Brooker lineage record, and the Chandler record, merge somewhere in that area.

It gets better.  Searches on FT-DNA, ySearch, and an email trail, revealed more Chandler Y cousins with an L haplogroup. All together, I have today found two 12 marker STR tests, that match my first 12 markers perfectly, with a prediction of zero genetic distance.  I have found another 12 marker with  slight difference, and a genetic distance of 1.  I have found a 37 marker test with some differences, but that still gives a genetic distance of 3.  A comparison with the Y37 test result, predicts 78% confidence of sharing a most recent common ancestor with me within 12 generations, and a 99% confidence of us sharing common Y descent within 24 generations.  This correlates quite nicely with the two perfect 12 marker testers.  All four testers are descended on the paternal line from Chandlers in the Basingstoke area.

The Chandlers of Basingstoke

Origins of the Chandler-Brooker L1b Y haplogroup

GEDmatch Kit M786040

 The above map of East Anglia, plots the ancestral events from my Gramps genealogical database, for my mother's ancestry alone.  All 100% of the events in her family history occur in East Anglia, with a significant concentration on the loam soils of East Norfolk, north of the River Yare, and shouldering up to the marshes of the Halvergate Triangle.  It includes events for the immediate families of 127 direct ancestors, stretching back to the 1680's in places.  Events include such things as births, baptisms, marriages, burials, deaths, census records, occupations, residence, etc.

Surnames include: Tovell, Tovil, Tammas, Tovell-Tammis, Lawn, Gorll, Gaul, Rowland, Dawes, Curtis, Key, Goffen, Goffin, Waters, Merrison, Morrison, Smith, Dove, Porter, Springall, Thacker, Daynes, Daines, Quantrill, Wymer, Rix, Hagon, Page, Nichols, Nicholes, Shepherd, Ransby, Briggs, Barker, Rose, Brooks, Larke, Dingle, Annison, Britiff, Symonds, Sales, Jacobs, Yallop, Moll, Hewitt, Osborne, Ginby, Ling, Briting, Hardyman, Hardiment, and Norton.  Surnames are all English or of Anglo-Danish origin.

Recorded religions are: Anglican Church of England, Baptist, Congregationalist (Presbyterian), Methodist, and Weslyan Methodist.  No Roman Catholicism, Islam, or Judaism.

The area has no significant immigration events in recent centuries, however, it has long held connections with the Dutch.  It is not near to the drained Fens (to the West of East Anglia), so would not have attracted any significant immigrant labour.  The City of Norwich has had communities of strangers, including medieval Jews, and more substantially, protestant refugees during the 16th century, from the Netherlands.   French Huguenots followed to Norwich.

The best known immigration to East Anglia, took place during the 4th to 11th centuries AD, from across the North Sea.  The elites of the Anglo-Saxon kingdom, claimed descent from the Angles, from Angeln  in the Schleswig-Holstein region of Northern Germany, that borders Denmark.  The area is rich in Anglo-Danish place-names.  East Anglia fell deep into the Dane-law.

Generation 2 has 2 individuals. (100.00%)

Generation 3 has 4 individuals. (100.00%)

Generation 4 has 8 individuals. (100.00%)

Generation 5 has 15 individuals. (93.75%)

Generation 6 has 30 individuals. (93.75%)

Generation 7 has 28 individuals. (43.75%)

Generation 8 has 26 individuals. (21.88%)

Generation 9 has 10 individuals. (4.69%)

Generation 10 has 4 individuals. (0.78%)

Total direct ancestors in generations 2 to 10 is 127.

The above photograph is of the wedding of my mother's parents, at Limpenhoe, Norfolk, in 1932.  It includes four of my great grandparents, and a great great grandmother.

I like to present my mother's heritage as a good reference for an area of particular interest.  An area that saw substantial early medieval immigration and admixture, from across the North Sea.  23andMe reports our haplogroup as H6a1.  Uploading the raw data to James Lick's mthap analyser, and to WeGene, both give a best match of H6a1a8.

That so much of her recorded ancestry, is so deeply rooted into East Anglia over the past 330 years, and particularly that one part of Norfolk, would suggest that she has strong East Anglian ancestry stretching back at least to the early medieval, and perhaps earlier.  I have recorded marriage between third, and second cousins, within her East Norfolk direct ancestry.  

I'm writing this post in response to a number of comments that I see online with regards to using a commercial DNA test, in order to ascertain ancestry.  Quite often, when someone asks how to find out their family history or ancestry, someone will come back with an answer in the form of "just spit in a vial, send it to Ancestry.com, and they'll tell you".  It's not really that simple, so I'm making this post, to explain how an ancestry DNA test can help, or not help, you discover your ancestry.  Nicely dumbed down I hope, for the beginner.

Traditional Genealogy

Traditional genealogists usually set out to create a genealogy (family history and tree), using interview techniques, artefacts, and oral memories, recorded from older relatives.  Artefacts might for example, include old family medals, or photographs.  They then extend the research, through documentary evidences, such as birth, death, and marriage certificates, church registers, census records, transcripts, electoral rolls, and military records. If they are interested in recording all ancestral information, and not merely a single line such as the surname line, then this research can go on for months, years, even decades.

What you cannot do, is to simply pay a small fee, and your entire family history drops through the letter box in a brown envelope.  It takes years of time to research, collate, and to verify a good family tree.  Most genealogy enthusiasts don't mind this, because they actually enjoy doing the research itself.  It becomes a hobby, even sometimes a passion.

However, a number of commercial DNA companies may give the general public the impression, that you now can simply pay a fee, spit or swab, and your ancestry magically appears for you on a website.  It's big business.  Does it work though?  Exactly what is genetic genealogy?

What is Ancestry and why do we care.

Ancestry can simply be defined as our descent from forbearers.  Why do we care who they were? Which forbearers or ancestors?  How many are there?  How far back?

Of course, not every one does care.  Not everyone cares about history.  But for other's how we define ourselves, our communities, and families, it does matter.  It tells us who we are, where we came from.  It defines us, gives us grounding.  It gives us identity.  Wars have often been inspired by ancestry.  At the same time, a deeper appreciation of the human family, and it's common ancestry, can be used to relate to those elsewhere.  One big family.  Discovering the immense poverty and hardships of our ancestors can help us to appreciate what we have, and to help others in need today.

So what ancestry can we discover?  For those few that merely concentrate on one patriarchal line, it's quite simple to define - the generations of a surname.  However, beyond that one narrow line of descent, few appreciate exactly how much total ancestry that we have.  Lets look at our biological ancestors at each generation:

• 2 parents
• 4 grandparents
• 8 great grandparents
• 16 great grandparents
• 32 g.g grandparents
• 64 g.g.g.grandparents
• 128 g.g.g.g grandprents
• 256 g.g.g.g.g grandparents.

These are only your 510 most recent direct ancestors, yet just those generations, will take you back to only around 250 years of family history.  Now add all of the recorded children of these direct ancestors - the great great uncles and aunts to the theoretical family tree.  You're probable going to have a tree of around 1,300 individuals.  That is just for 250 years.  You have a big family  Go back a few more generations, and it will explode before you reach far.  All of those direct ancestors though, are a part of your ancestry.  You'll most likely carry some DNA from most of them.  They are, from a biological perspective, who you are.

By the way, the number of biological ancestors will not continue to increase infinitely.  Because increasingly, you will find couples within your tree that are distant biological cousins of each other.  As this accelerates through thousands of years, that explains how all modern people around the world, all descend from a very small population around 100,000 years ago.

So before considering what DNA can do for genealogy, we need to consider which ancestors matter to us.  Do you just want to know who your biological parents, or grandparents were?  Do you want to know the names, places and social positions of your ancestors over centuries?  Do you want to know which parts of the world that your ancestors lived 500 years ago?  Do you want to know how some of your prehistoric ancestors moved across the globe, thousands of years ago?  Maybe you want to know everything.

Let's now turn to genetics for genealogy, and how DNA tests can answer some of these questions.

There are two main types of DNA tests for ancestry, although they are often incorporated together by commercial companies:

1. The haplogroups, the Y-DNA and mt-DNA
2. Autosomal DNA

The haplogroups are chains, or markers, that are carried on one of only two strict lines of descent.  They do not apply to your entire ancestry - just two lines.  As we saw above, we have 256 g.g.g.g.g grandparents (unless any of their descendants reproduced together).  Our haplogroups came from only two of them.  Your haplogroup does not define you.  Yet, it's quite odd, because very quickly, many genetic genealogists do relate to them, rather like a hereditary football club.  They do become an identity, only if you enthuse over them.

The Y or paternal haplogroup, follows the strict paternal line.  From father to son.  Women do not have a Y chromosome, so cannot pass it on.  It has to come from the biological father.  However, within this constraint, Y-DNA is particularly useful to genealogists.  It mutates often, both as STRs and less often, as SNPs (snips).  Because of these frequent mutations, it is useful for tracing shared descent with others.  It can also be aligned with surname studies.  The champion commercial DNA company for Y-DNA research, is Family Tree DNA.

The mt or mitochondrial (maternal) haplogroup, follows the strict maternal line.  From mother to children.  Both sons and daughter inherit their mt-DNA haplogroup from their biological mother.  However, only the daughters can pass it down.  Two downfalls to mt-DNA for genealogy.  1) The surname frequently changes, traditionally nearly every generation through marriage. 2) it doesn't mutate as frequently as the STRs of Y-DNA. It is still a useful tool, and can prove descent through the maternal line.  It can also still be used for studies of much deeper, ancient ancestry.

This is the bulk of you DNA.  All of the snips (SNPs), that make up who you are genetically.  You receive approximately 50% from each parent, 25% from each grandparent, 12.5% from each great grandparent.  This subdivision cannot go on forever, and indeed, once you go back much more than six generations, the approximates start to deviate, so that you may have no snips at all from a particular line that joined your family tree over 250 years ago.

The problem with autosomal DNA is that it can be such a mess.  It recombines randomly with every generation.  Therefore, it is much harder to track ancestry in the same way, that we can with the haplogroups.

So how can they be applied for genealogy:

Not everyone knows who their biological parents were, or where they came from.  This is the first use of DNA testing.  It can be used to find, test, or prove recent descent.  The first hurdle of genealogy.  Both haplogroup evidence, and autosomal evidence can be used to prove or determine relationship.

Cousins

Many genetic genealogists, use DNA to find distant, and sometimes not so distant cousins.  The hope is that they can link trees, share knowledge and research, perhaps copies of artefacts.  Therefore an awful lot of genetic genealogy is about tracing genetic relatives, and establishing common ancestry.

There are two main tools:

• Haplogroup Projects.  The Y haplogroup is favoured for it's frequent STRs, and also for it's link to surnames.  Family Tree DNA projects track the STR and SNP data of it's members, tracking families, relationship, known mutations.  Project administrators at FTDNA can predict relationship to other members in the project.  Your Y cousins.
• Shared segments.  Autosomal DNA can be used for finding distant cousins.  23andMe for example, have Relative Finder.  Alternatively customers of any commercial DNA company that gives them access to their raw data, can upload that data to GEDMATCH.  At GEDmatch, they can search for other kits, looking for lengths of shared segments (measured in cM - centimorgans) on the autosomes or X chromosomes.  The longer or more segments can be used to indicate shared ancestry.

It is important to understand, that this is not about directly tracing ancestry.  It is only about establishing shared biological ancestry, with other researchers, with which you may be able to share resources.  In the old days of genealogy, we would find distantly related researchers by browsing through annually printed surname interest directories.  Here, the same thing is happening, but we are finding people by comparing DNA.

Ancestry from Autosomes

Most commercial DNA companies providing ancestry information, now use their own propriety calculators to look at the autosomal DNA of their customers for patterns that they can relate to a number of reference populations.  23andMe for example, uses Ancestry Composition to determine what parts of the world, that the ancestors of their customers lived 500 years ago.  They predict from this in percentages of ancestry.

However, it is very much a developing art.  The problem is that genes have been randomly mixing and moving around ever since prehistory.  The customers of these DNA companies want hard facts.  They want their ancestry accurately pin pointed down to modern or ancient nation-states, or to historical populations such as the Vikings or Huns.  Ancestral DNA companies are under pressure to provide this deep ancestry.  However, can they?  Ancestral analysis of DNA can be very enlightening.  It can provide some surprises within a family history.  However, it's accuracy is exaggerated.  It is increasingly successful at predicting ancestry from a particular corner or end of a particular continent.  But it cannot for example, accurately tell French, British, and German ancestry apart to any high accuracy.  It can recognise some populations better than others.  It cannot tell anyone if they had Viking ancestry.

Ancient Ancestry

This is a particular value of the haplogroups.  As we accumulate more and more data on more mutations, as we expand the recorded database, and as we relate that to more ancient DNA extracted from referenced and dated ancient human remains, so we will be able to better explore the population genetics not only in history, but deep into prehistory.

However, it is also becoming increasingly realised, that patterns of ancient admixture can also be detected within the autosomes.  Although Autosomal DNA ancestry calculators claim to reveal relatively recent admixtures over the past 500 years, it is becoming clear that these are being confused by much older patterns of admixture.  These patterns can now be explored and probed on a number of GEDmatch programs.  People can compare their DNA with the kits from ancient DNA, or predict just how much of their ancestry was likely "Western Hunter-Gatherer, or "Early Neolithic Farmer".

In addition, more DNA companies are now measuring for much more ancient admixture with archaic populations such as the Neanderthals.

Conclusion

Genetic Genealogy is fun, great fun.  It is not however, a quick and easy replacement for traditional genealogy.  Unless you get lucky with some comparative Y-DNA in a project, it is not going to directly tell you the names or social status of any ancestors.  It can give you a phylogenetic tree, but not any kind of family tree that you can bore other family members with.

Genetic genealogy can provide some tools to some researchers.  It can test biological relationship.  It can be used to predict some of your ancient history.  For most researchers, particularly those that are able to interview many local family members, search local grave yards, access archives and records - it has no, or little value to the pursuit of collecting ancestors.

I personally love to explore my genetic genealogy. But it is documentary research that provides the names.  Genetic genealogy for myself, is more about the long and ancient journey.

First a disclaimer.  I'm very new to the whole world of genetic genealogy.  I'm not new however, to traditional genealogy, and I do have a pretty good amateur understanding of relative archaeological and anthropological discussions over the past fifty years.  The following is not meant as a critique of genetic genealogy, so much as a review, or my experience, of ancestry composition based on autosomal DNA analysis.

Let's start with my paper trail.

Traditional Genealogy

I am English by ethnicity, British by nationality, and a subject of Queen Elizabeth II (often now referred to as a UK Citizen).

My paper recorded ancestry consists of the genealogical records of:

• Generation 1 has 1 individual. (100.00%)
• Generation 2 has 2 individuals. (100.00%)
• Generation 3 has 4 individuals. (100.00%)
• Generation 4 has 8 individuals. (100.00%)
• Generation 5 has 16 individuals. (100.00%)
• Generation 6 has 29 individuals. (90.62%)
• Generation 7 has 49 individuals. (76.56%)
• Generation 8 has 35 individuals. (27.34%)
• Generation 9 has 24 individuals. (10.16%)
• Generation 10 has 10 individuals. (2.34%)
• Generation 11 has 4 individuals. (0.39%)
• Total ancestors in generations 2 to 11 is 181. (9.04%)

All 181 ancestors, reaching back to the 1690's, appear to be English born, of English ethnicity, with English surnames.  The majority of them (100% on my mother's side, and 81% on my father's side) were East Anglian, with the vast majority of that percentage being born in the county of Norfolk.  Religions recorded or indicated were CofE Anglican or non-conformist Christian.  No sign of any Catholicism, Islam, or Judaism.

Therefore it would look pretty likely, that I can claim English heritage, wouldn't you agree?

Genetic Genealogy and Ancestry Prediction

There are three aspects or avenues of inquiry, available for genetic genealogy.  First of all, the two sex haplogroups; the y-DNA, and the mt-DNA. These two "signals" are referred to as haplogroups.

1. The y-DNA.  This follows the Y chromosome.  It is only carried by men.  It is passed along the paternal line, and only by that line, from grandfather, down to father, down to son, until the line is broken.  What a lot of people do often misunderstand, is that it does not represent 50% of your ancestry.  It does not represent all of your biological father's ancestry.  For example, his mother's father, and her brothers, although on your father's side, would most likely carry a different y-DNA haplogroup.  It only comes down an uninterrupted strictly paternal line.  Even at Generation 7 (g.g.g.g grandparents) above, it would have been carried by one out of my sixty four biological ancestors at that generation.  The other thirty one g.g.g.g grandfathers for that generation may have carried different Y haplogroups.
2. The mt-DNA.  Although a very different type of DNA, this one works as the opposite sex haplogroup.  It is a signal that is passed down the strictly maternal line, from grandmother, to mother, to her children.  Yes, we men do inherit our mother's mt_DNA, but we can't pass it down.  Only our sisters can.
3. The au-DNA, better known as Autosomal DNA.  Whereas the former two sex haplogroups are handy, because we can measure their mutations, and track their formation and movement across thousands of years, au-DNA really is the stuff that we are made of - all of the SNPs on our chromosomes that personalise us within the human genome.  We inherit our au-DNA from all of our recent ancestors.  Roughly 50% from our biological mother, and 50% from our biological father.  Equally, we could say on average, 25% from each grandparent, or 12.5% from each great grandparent.  However, it is messy.  At every reproduction (meiosis), it gets messed up by recombination.  Not only that, but go back much more than six generations, and it becomes more and more likely that you can lose entire lineages.  You can have no surviving trace of any DNA from for example, a particular g.g.g.g.g grandparent.

Autosomal DNA is what makes us individuals, gives us our hereditary traits.  It is passed down from many ancestors, via our parents.  However, the sex haplogroups are of interest because they can be traced across the globe, and the millennia.  As we gain more and more data - both from living populations, and ancient DNA from archaeological finds, so we will be able to track the STR and SNP mutation data more precisely.

However, what about poor old messed up autosomal DNA?  It represents our entire biological heritage over many generations. It is what we are. However, making sense of it is less easy, less precise.  Genetic genealogists are making progress, but it is far less of a precise science than either of the haplogroups.  They use calculators, that measure the segments of DNA cross the chromosomes, looking for patterns that they recognise from a number of known reference populations.  From that, these calculators predict an ancestry.  Exactly what and when that ancestry refers to, does seem to vary from one calculator to another.  There is an argument that the precision can be improved if you also test close known relatives including at least one parent.  The results can then be phased.  I'm actually waiting for the results for my mother, so that I can see my own au-DNA ancestry results phased and corrected.

So lets have a bit of fun, and see what some of the calculators suggest for my autosomal DNA, at least before any phasing with my mother's DNA.  What do they make of my 100% English paper ancestry?

23andMe.com Ancestry Composition Standard Mode

99.9% European.

Broken into:

83% NW European

17% Broadly (unassigned) European

I think that's pretty cool.  As I'm getting to know au-DNA predictions, so as I'm learning to appreciate it when they get the right continent, and the right corner of that continent.  That is more than they could do a decade or two ago.  The prediction is correct, I am a NW European.  I'm not a West African, a South Asian, or a East Siberian.

23andMe.com Ancestry Composition Speculative Mode

100% European

Broken into:

94% NW European

3% S European

3% Broadly (unassigned) European.

Whoa, where did that South European come from?  It could just be a stray incorrectly identified signal, or it could be telling me that one of my ancestors, maybe around Generation 6, were from down south!  Lets break down the prediction further.  First, the NW European:

32% British & Irish

27% French & German

7% Scandinavian

But surely I should be 100% British & Irish?  Not only 32%.  I have my own ideas about this.  I think that although 23andMe claims that Ancestry Composition only represents the ancestry of the past 300 to 500 years (the so-called migration period, as sold to USA customers), that it gets confused by earlier migrations across their reference populations, including those during the early medieval period, and perhaps even some of those during late prehistory.  I've noticed that across Ireland and Britain, the further to the east, the more diluted the 23andMe British & Irish assignment.  People of solid Irish ancestry get between 85% and 98% British & Irish.  My East Anglian results, mixed between British & Irish, French & German, and Scandinavian, are actually rather more like those received by Dutch customers of 23andMe.

As for that Southern European prediction, how does that break down?

0.5% Iberian

2.4% Broadly (unassigned) South European.

Which if taken seriously, might suggest that I have an unknown Spanish or Portuguese ancestor around Generation 6.  If I did take it seriously that is.  I wonder what my mother's test will reveal?

DNA.Land.com Ancestry Composition

This is a third party site, that you can upload your 23andMe V4 raw data to, and see what their calculators predict for your ancestry.  It has recently had it's ancestry composition revised.  What did that make of my 100% English au-DNA?

West Eurasian 100%.

I like that designation, the amateur anthropologist in me prefers that broad designation over "European".  Broken down:

77% North/Central European

19% South European

2.4% Finnish

1.3% unassigned.

What?  Why not 100% North/Central European?  Finnish?  Did some early medieval Scandinavian settlers of East Anglia bring it?  Or is it a false signal?  Misidentified au-DNA?

That darned South European kicked in again.  I'm here looking at a biological cuckoo NPE (non-parental event) at around Generation 5 or even more recent!  Did a great grandmother secretly have a South European lover?  But this South European breaks down further:

13% Balkan

6% Italian.

Oh my goodness, whereas 23andMe speculative mode suggested SW Europe - this one suggests SE Europe!  Do I have a secret Albanian great grandfather?  Or is it all nonsense?

WeGene.com

This is a cracking new third party DNA analyser.  It is based in China, and it's predictors appear to calculate mainly for a Chinese market.  It not only predicts your ancestry composition, but also your two sex haplogroups, and lots of traits and health predictions to compliment those of 23andMe.  It even tries to predict your genetic disposition to sexuality!

It will allow you to send your 23andMe V4 raw data direct to it's own calculators.  However, at the moment the website is almost entirely in Chinese (Mandarin?).  There are two options.  1) At the bottom of the webpages is a hyperlink to English, which gives, in English, a basic ancestry composition, and your haplogroups.  It does not include English versions of the health and trait results.  2) use an online translator, such as the one built into the Google Chrome browser.  It actually serves pretty well.

On sex haplogroups they give my Y-DNA as

L1.  Not bad, but they didn't make it to L1b or L-M317.

My mtDNA?

H6a1a8.  Very good.  Better than 23andMe's H6a1, and the same as the mthap program.

But this is about au-DNA, how did they do, what did they make of my 100% English ancestry?

81% French

19% English/Briton

Now, that sounds pretty awful, but on closer inspection, I'm impressed.  No South European great grandfather.  Okay, so most of my DNA has been placed on the wrong side of the Channel.  However, I know that French and English DNA is actually very close.  Recent surveys even suggest that the English have inherited a lot of common ancestry with the French during unknown migration late in prehistory.  So again - they very much got the right corner of the right Continent.  Well done WeGene.

GEDmatch.com Eurogenes K13

GEDmatch is a website that you can upload raw data not only from 23andMe, but from a range of testers, and from V3 chips as well as V4.  It hosts a number of tools and predictors - some Open Source.  Some of these predictors are for Admixture or ancestry composition.  They measure your ancestry in terms of distance from known reference populations.  The lower the number, the closer you are to their reference.  They use calculators known as oracles to predict ancestry, including mixed ancestry or admixture.

The oracles on the Eurogenes K13 and K15 calculator models have a good reputation at working with West Eurasian ancestry.  So how does K13 first, score my 100% English ancestry?

On Single Population Sharing, it rates my DNA against the closest references.  In order of closest to not so close, the top five are:

GEDmatch.com Eurogenes EU test V2 K15

• Don't expect DNA Ancestry tests to pin point an actual country of ancestry.  They're not no where near that good yet.  The populations of West Eurasia, and elsewhere, are actually all mixed up, or share a lot of recent admixture.  In addition, many European nation-states are quite recent inventions.  I've seen the borders of Europe change in my short lifetime.
• Don't expect precision.  If for example, you are an American, and a 23andMe AC test suggests only 32% British & Irish, then you could actually have 100% English ancestry over the past 300 years!  We're so mixed up, that these tests are struggling to part and identify us by nationality.
• If you are willing to share your raw data (there are privacy issues), then have fun trying out all of these third party calculators.  It's a lot of fun as you can see.  They rarely agree.  There are other tools on GEDmatch for example, where you can compare DNA along with .gedcom genealogical files with other users - and look for shared segments on the chromosomes.  You can also compare your DNA to that of ancient populations.
• Treat au-DNA differently to haplogroup results.  au-DNA is very interesting, and represents so much of our ancestry, if we could just sort some of the mess out.  You can partially do this by phasing your results with those of close relatives.  It is worthwhile phasing with at least one biological parent, if you can.  However, haplogroup results, provide by their mutations incredible stories over much longer periods - thousands of years.  A different kind of genealogy.  As we gather more data, and reference it also to ancient-DNA, so it will tell us more and more about two lines of descent.  Perhaps even into historical times.