Novel SNPs for Paul Brooker Y Haplogroup L-M317 (+SK1414) Family Tree DNA kit 491864

I've just stored this data here, as a "in case it was lost".  All of the Novel SNPs as listed by FTDNA Y Haplogroup L project administrator, Gareth Henson, based on my FTDNA Big Y test, including both YFull and FullGenomes analysis of the Big Y data.

117 Novel SNP's not yet recorded on any other sample.

Position Reference Derived Reads YFULL FTDNA FGC YFull Temp Name YFQ YFull Qual Desc FGC Name FGC Qual

Comments
2872307 C A 80 Y Y Y YFS1985627 100 Best qual FGC51036 100


3440120 T C 22 Y N Y YFS1985628 100 Best qual
40


3650777 G A 2 Y N N YFS1985629 100 Ambiguous qual



Probably just "noise"
3851037 C A 2 Y N Y YFS1985630 100 Ambiguous qual
10

Probably just "noise"
4676699 T A 2 Y N N YFS1985635 100 Ambiguous qual



Probably just "noise"
4953978 A T 2 Y N N YFS1985636 100 Ambiguous qual



Probably just "noise"
5627893 T A 3 Y N N YFS1985637 100 Acceptable qual



Reads below FTDNA threshold
6134978 G T 77 Y Y Y YFS1985638 91 Acceptable qual
10


6391676 G A 73 Y Y Y YFS1985641 100 Best qual
10


6419919 G T 2 Y N Y YFS1985642 100 Ambiguous qual
10

Probably just "noise"
6643664 C T 33 Y Y Y YFS1985643 100 Best qual FGC51038 100


6701612 A G 51 Y Y Y YFS1985644 100 Best qual FGC51039 100


6715132 A G 5 Y N Y YFS1985645 100 Best qual FGC51040 95

Reads below FTDNA threshold
6893378 T C 30 Y Y Y YFS1985646 95 Acceptable qual FGC51041 100


7032017 C A 80 Y Y Y YFS1985649 100 Best qual FGC51042 100


7327691 G A 78 Y Y Y YFS1985652 97 Acceptable qual FGC51043 100


7377200 G A 47 Y Y Y YFS1985653 100 Best qual FGC51044 100


7517429 G A 54 Y Y Y YFS1985656 100 Best qual FGC51045 100


7581204 G T 41 Y Y Y YFS1985658 96 Acceptable qual FGC51046 100


7750714 A T 8 Y N Y YFS1985660 100 Best qual
40

Reads below FTDNA threshold
7764687 G T 30 Y Y Y YFS1985661 100 Best qual FGC51047 100


7799504 G A 82 Y Y Y YFS1985662 98 Acceptable qual FGC51048 100


7957071 A C 11 Y Y Y YFS1985663 100 Best qual FGC51049 100


8208710 T C 39 Y Y Y YFS1985664 96 Acceptable qual FGC51050 100


8461000 C A 70 Y Y Y YFS1985666 98 Acceptable qual FGC51051 100


8468697 T C 17 Y Y Y YFS1985667 100 Best qual FGC51052 100


8485396 T G 102 Y Y Y YFS1985668 100 Best qual FGC51053 100


8573893 C T 86 Y Y Y YFS1985669 100 Best qual FGC51054 100


8637541 G A 6 Y N Y YFS1985670 100 Best qual FGC51055 95

Reads below FTDNA threshold
8801867 A G 48 Y Y Y YFS1985672 100 Best qual FGC51056 100


8872964 G A 25 Y Y Y YFS1985673 100 Best qual FGC51057 95


9124517 C T 89 Y Y Y YFS1985674 100 Best qual FGC51058 100


9139036 G T 41 Y Y Y YFS1985675 100 Best qual FGC51059 100


9169290 A T 30 Y Y Y YFS1985677 100 Best qual FGC51060 100


9754516 T C 26 Y Y Y YFS1985683 100 Best qual
40


9838293 G C 64 Y Y Y YFS1985684 100 Best qual FGC51061 100


13135709 C T
N Y Y


FGC41711 100

Recurrent mutation?
13679122 C T
N Y Y


FGC51064 100


13855794 C A 2 Y N Y YFS1985793 100 Ambiguous qual
10

Probably just "noise"
14031785 C A 8 Y N Y YFS1985860 100 Best qual
40

Reads below FTDNA threshold
14426597 G A 56 Y Y Y YFS1985862 98 Acceptable qual FGC51065 100


14612339 A T
N Y Y


FGC51066 100


14638509 T C 55 Y Y Y YFS1985864 92 Acceptable qual SK1414 100


14751018 C T 56 Y Y Y YFS1985865 100 Best qual FGC51067 100


15039403 T C 63 Y Y Y YFS1985868 100 Best qual FGC51068 100


15160593 C T 16 Y Y Y YFS1985870 100 Best qual FGC51069 100


15311752 C G 64 Y Y Y YFS1985872 100 Best qual FGC51070 100


15349365 G A 68 Y Y Y YFS1985873 100 Best qual FGC51071 100


15491978 T C
N Y Y


FGC22105; YFC006597 10

Recurrent mutation (boundary between TA and CA repeats)
15584574 G A 5 Y N Y YFS1985874 100 Best qual FGC51072 95

Reads below FTDNA threshold
15633507 G A 49 Y Y Y YFS1985875 100 Best qual FGC24349 100

Recurrent mutation?
15777291 G T 18 Y Y Y YFS1985876 100 Best qual FGC51073 100


16042702 C G 7 Y N Y YFS1985877 100 Best qual FGC51074 95

Reads below FTDNA threshold
16134641 G C 8 Y N Y YFS1985878 100 Best qual FGC51075 95

Reads below FTDNA threshold
16309939 T A 49 Y Y Y YFS1985879 100 Best qual FGC51076 100


16406336 C T 88 Y Y Y YFS1985880 94 Acceptable qual FGC51077 100


16547983 C T 66 Y Y Y YFS1985881 100 Best qual FGC51078 100


16611208 C T 46 Y Y Y YFS1985882 100 Best qual FGC51079 100


16764043 T C 40 Y Y Y YFS1985883 93 Acceptable qual FGC51080 100


17099361 T C 48 Y Y Y YFS1985884 94 Acceptable qual FGC51081 100


17394936 T C 54 Y Y Y YFS1985886 97 Acceptable qual FGC51082 100


17448259 A G 8 Y N Y YFS1985887 100 Best qual FGC51083 95

Reads below FTDNA threshold
17463141 G A 11 Y Y Y YFS1985888 100 Best qual FGC51084 100


17504007 C A 2 Y N Y YFS1985889 100 Ambiguous qual
40

Probably just "noise"
17575329 G T 31 Y Y Y YFS1985890 100 Best qual FGC51085 100


17774733 T A 19 Y N Y YFS1985891 100 Best qual
10

3 SNPs close together - probably a single mutation event
17774735 G A 19 Y N Y YFS1985892 100 Best qual
10

17774737 T C 19 Y N Y YFS1985893 100 Best qual
10

17938564 C T 95 Y Y Y YFS1985894 100 Best qual FGC51086 100


18045221 A T 55 Y Y Y YFS1985895 100 Best qual FGC51087 100


18557184 G A 64 Y Y Y YFS1985898 98 Acceptable qual FGC51088 100


18675826 A T 18 Y Y Y YFS1985899 100 Best qual FGC51089 100


18919156 G A 76 Y Y Y YFS1985901 100 Best qual FGC51090 100


19057204 G A 19 Y Y Y YFS1985902 100 Best qual FGC17900 100

Recurrent mutation?
19119491 A C 23 Y Y Y YFS1985903 100 Best qual FGC51091 100


19508605 A G 62 Y Y Y YFS1985905 98 Acceptable qual FGC51092 100


19544681 G T 8 Y N Y YFS1985906 100 Best qual FGC51093 95

Reads below FTDNA threshold
20692245 T C
N Y Y



40


21037375 C T 4 Y N Y YFS1985916 100 Acceptable qual FGC51094 95

Reads below FTDNA threshold
21141871 G C 51 Y Y Y YFS1985917 97 Acceptable qual FGC51095 100


21152868 T G
N Y Y


DC323 (also known as S4815) 10

Recurrent mutation
21374612 G C 68 Y Y Y YFS1985919 100 Best qual FGC51096 100


21392171 G A 22 Y Y Y YFS1985920 100 Best qual FGC51097 100


21412260 C A 7 Y N Y YFS1985921 100 Best qual
40

Reads below FTDNA threshold
21504880 G A 18 Y Y Y YFS1985922 100 Best qual FGC51098 100


21550243 A C 20 Y Y Y YFS1985924 100 Best qual FGC51099 100


21554777 G T 2 Y N Y YFS1985925 100 Ambiguous qual
40

Probably just "noise"
21628664 C T 81 Y Y Y YFS1985926 100 Best qual FGC51100 100


22230862 A G 55 Y Y Y YFS1985927 92 Acceptable qual FGC51101 95


22240008 T C
N Y Y


ZS5617 40

In volatile DYZ19 region
22259810 G C
N Y Y



40

In volatile DYZ19 region
22261622 T C
N Y Y



40

In volatile DYZ19 region
22262437 T A
N Y N






In volatile DYZ19 region
22262459 G C
N Y Y


site of BY1891 40

In volatile DYZ19 region
22262502 A G
N Y Y



10

In volatile DYZ19 region
22268591 A T
N Y Y



40

In volatile DYZ19 region
22423571 C A
N Y Y



10

In volatile DYZ19 region
22521253 T C 18 Y Y Y YFS1986012 100 Best qual FGC51102 100


22523410 G A 44 Y Y Y YFS1986013 100 Best qual FGC51103 100


22573608 A G 57 Y Y Y YFS1986014 95 Acceptable qual FGC51104 100


22675321 T C 45 Y Y Y YFS1986015 97 Acceptable qual FGC51105 100


22749142 A C 65 Y Y Y YFS1986016 100 Best qual FGC51106 100


22760336 A G 35 Y Y Y YFS1986017 100 Best qual FGC51107 100


23081618 G A 34 Y Y Y YFS1986018 96 Acceptable qual
10


23249958 T C 66 Y Y Y YFS1986019 100 Best qual FGC51108 100


23283344 T C 72 Y Y Y YFS1986020 88 Ambiguous qual
40


23324862 T A 63 Y Y Y YFS1986023 98 Acceptable qual FGC51109 100


23401635 A G 15 Y Y Y YFS1986024 100 Best qual FGC51110 100


23479996 A T 59 Y Y Y YFS1986025 100 Best qual FGC51111 100


23563109 G A
N Y Y


YP5075


Recurrent mutation?
23633302 T C 22 Y Y Y YFS1986027 95 Acceptable qual FGC51112 100


23638466 A C 81 Y Y Y YFS1986028 98 Acceptable qual FGC51113 100


23832496 G C 33 Y Y Y YFS1986030 100 Best qual FGC51114 95


23899850 T C
N Y Y



40


24001198 C T 13 Y N Y YFS1986033 100 Best qual FGC51115 100

Reads below FTDNA threshold
24026825 G T 2 Y N N YFS1986035 100 Ambiguous qual



Probably just "noise"
24428691 T C 26 Y Y Y YFS1986036 100 Best qual FGC51116 100


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